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In viticulture, every little decision has an impact: on the soil, on the health of the plants and on the quality of the grapes that form the basis of the wine that reaches our table. The future of viticulture may depend on a single biosolution. Or a hundred. In VINNY, an ambitious European project of which InPP is a part, researchers from ten countries are looking for bioactives capable of curbing vine diseases - and, at the same time, reducing dependence on synthetic agrochemicals. What's at stake is not just science: it's the sustainability of this industry.

The aim of the VINNY project is simple but transformative: develop and implement effective, sustainable solutions and adaptable to the needs of winegrowers in various European countries, creating environmentally friendly biopesticides and biofertilizers, and advanced nano-encapsulation technologies, to reduce dependence on conventional chemicals and promote a healthier ecosystem and a better environment and a circular viticulture.

And at the heart of this mission is an essential cog in the wheel: the daily work of the researchers who search for answers invisible to the human eye - as is the case with Tiago Amaro, a researcher at InPP.

Image credits: VINNY Project

Searching for the Guardians of the Vine

The road to these new biosolutions begins in the field, with the vine. The initial work of Tiago Amaro, started in September 2024 and focuses on identifying and isolating microorganisms naturally present in the vines themselves, in samples received from partners in Portugal, Spain, Austria and Denmark.

From grapes, sticks or woody fragments, small microscopic worlds arrive in the laboratory that may contain the natural weapons needed to fighting three major threats to the vineyard, with a direct impact on farm profitability:
- A gray mold (Botrytis cinerea) and blue mold (Penicillium expansum): Fungi that cause post-harvest diseases, In the case of wine grapes, this affects the quality of the wine and makes it completely impossible to sell table grapes.
- The vine tumors: Caused by bacteria Allorhizobium vitis, This disease affects the plant in the field, causing leaf fall and reduced grape production.

Tiago Amaro, InnovPlantProtect researcher, identifying and isolating bacteria as part of the VINNY project. Image credits: InnovPlantProtect - Inês Ferreira

After isolating the microorganisms, Tiago dedicated himself to creating libraries of bacteria. What is a ‘Bacteria Library’? In the context of the investigation, a bacteria library is an organized and catalogued collection of bacteria isolated from different sources. It allows scientists to test each strain of bacteria against specific pathogens, constituting a vast catalog of potential biological ‘superheroes’ for plant protection.

This rigorous screening, which has already led to the analysis of more than 190 bacteria of this library is the first line of defense. The team selects the best candidates with the potential to be used as biological control agents against the diseases under study.

The Power of European Collaboration

What if the solution to protecting Portuguese vineyards is hidden in a Danish grape? Or in a bacterium isolated in Spain? One of the most exciting aspects of the project is its truly collaborative dimension, where researchers from ten countries are working in parallel, sharing answers, challenges and microorganisms in search of effective biosolutions for the whole of Europe.

All the solutions found will be shared, all the solutions will be tested by all the partners and it will be possible to build a ‘library of solutions’ against the various vine diseases“ emphasizes researcher Tiago Amaro.

The sharing of bacteria and extracts from different ecosystems (Portugal, Spain, Denmark and Austria) is crucial. An effective bacterium in Denmark could be the key to protecting Portuguese vineyards, and vice versa. This exchange of biological solutions, one of the innovative pillars of the project, makes it possible to exploit the microbial biodiversity beyond national borders. InPP has the fundamental role of testing, in grapes, the solutions discovered by our team as well as by other national and European partners.

This diversity of tests is a bet on the future: microorganisms that don't prove effective against vine diseases could be the solution for pathologies in other crops.

Left photo: Tiago Amaro, InPP researcher, observing a grapevine leaf, the target crop of the VINNY project, Right photo: Potted grapevine plants in the InPP greenhouse, ready to test the solutions found by the various VINNY partners. Image credits: InnovPlantProtect - Inês Ferreira

The Real Test: From the Lab to the Field

After selection in the laboratory, the next step - the formulation of the most promising bacteria - will be carried out in Portugal and Spain, at the University of Minho and the Polytechnic University of Catalonia. But it is in the field-testing phase that the greatest challenge of plant protection science lies, because even brilliant results in the laboratory can fail in the field. Formulation is the process that turns a bacterium into a product - stable, applicable and compatible with the farmer's needs.

Tiago Amaro emphasizes necessary resilience:

  • Field Uncertainty: Often, promising solutions in the laboratory or greenhouse are not as effective when applied in the field, due to environmental variables (climate, soil, etc.).
  • The Time Factor: Diseases such as Allorhizobium vitis may take a long time to develop, or the infection may not be relevant in certain years, which makes it difficult to obtain robust conclusions.
  • The Agricultural Cycle: It is necessary to test the formulation in the field during three to five consecutive years, and recording all the variations observed. With only one harvest a year, this process requires patience and persistence.

In total, from the discovery of a promising bacterium to the creation of a formulated product, proven to be effective and ready for the market, it can take around 10 years - a real test of any scientist's resilience.

Customized solutions: the new requirement of modern agriculture

The final challenge is to ensure that the tests are relevant to the producer's reality. The current trend in the agricultural sector is the search for customized solutions, adapted to the specific conditions of the farms: “There has to be a solution for every field and every farmer”, says the researcher.

This personalized approach requires more science, more rigor and more local knowledge - exactly what VINNY seeks to build.

A Europe united by science and the vine

InPP is part of this consortium, made up of 19 partners from ten countries, The project is led by the University of Minho and funded by the Horizon Europe program.

Together, they seek to answer a question that could shape the future of European viticulture: Will it be possible to find effective biosolutions for all partner countries?

The answer is still being written - in laboratories, in experimental vineyards, in fields in different climates and geographies.
And it's made up of small discoveries, many frustrations and a huge commitment to science.

Because protecting the vineyard of the future is not just a technical ambition.
It is a cultural, economic and environmental commitment.
And VINNY is helping to design that future - one microorganism at a time.

The final workshop highlighted three years of research dedicated to the early detection of pathogens in crops such as wheat and olive groves.

The project AlViGen has reached its final stretch, concluding three years of research focused on the genomic surveillance of agricultural diseases. The results now presented promise to strengthen the Alentejo agricultural sector's ability to respond to emerging phytosanitary threats.

On the day October 23rd, The final project workshop, The event brought together researchers, producers and technicians to share results and reflect on the future of genomic surveillance in Portuguese agriculture.

A pioneering genomic surveillance center

During AlViGen, the Alentejo's first genomic surveillance center, an infrastructure with capacity for early detection of diseases in strategic crops such as wheat and olive grove. This breakthrough marks a decisive step towards a more precise, sustainable and science-based agriculture.

Results and scientific contributions

Using innovative molecular tools, the project team succeeded:

  • Identify pathogenic fungi before visible symptoms appear on the plants;
  • Characterizing yellow rust strains, genetically linking them to others known at a global level;
  • Detecting resistance genes in wheat to the strains currently present in Portugal;
  • Developing diagnostic methods able to distinguish the different species of the fungus that causes gafa in olive groves.

During the workshop, the potential of the analysis of the airborne fungi community as a tool for early warning for multiple pathogens, allowing for more effective and preventive management of crop diseases.

From research to practical application

The event ended with a debate on how transform AlViGen results in a detection and warning service accessible to the agricultural sector. The initiative reflects the joint commitment between science, innovation and production, with a view to protecting national agriculture from the challenges of the future.

Partnerships and thanks

InnovPlantProtect would like to thank all the partners and funders of the project:
University of Évora, John Innes Centre, INIAV, De Prado, CERSUL, Eugénio de Almeida Foundation, Torre das Figueiras Estate, Almojanda, Malheiro Estate, Directorate-General for Food and Veterinary (DGAV), la Caixa“ Foundation”, BPI Bank e Foundation for Science and Technology (FCT).

Image credits: InnovPlantProtect - Inês Ferreira

InPP took part in the kick-off meeting for the European PROSPER project, held on October 2 and 3 in Pavia, Italy. In attendance were the director of the Monitoring and Diagnostics Department, Ilaria Marengo, and the project manager, Bruno Orrico.

PROSPER's main objective is to transform European agriculture by valorizing highly resilient “orphan” legumes - forgotten crops, but full of potential to face the climate and food challenges of the future.

The project promotes sustainable, innovative practices adapted to different agricultural realities.

Over the two days, 27 partners from 13 countries met for presentations, in-depth discussions and strategic talks about the project's next steps.

We are excited about what comes next, certain that this journey will be more than a collaboration - it will be a true cooperation within an exceptional team.

Join us and keep up to date with all the news from the PROSPER Project!

EVENTS

Sometimes, if you're inside a building, it's hard to tell whether or not it's raining outside. However, you will easily conclude that it is raining if you see people with open umbrellas. The umbrella is an accessory that helps human beings deal with their environment.

Bacteria can also use “accessories” to better cope with their environments. These accessories, however, have much more profound effects on the lives of microbes, as they take the form of genes that can be integrated into their own genomes. These “accessory” genes are obtained from other microbes or from the environment, and can play various roles, from allowing bacteria to resist antibiotics to enabling symbiotic associations with plants.

Image: Adrianna Calvo/ Pexels

At InPP, the Data Management and Risk Analysis Department is comparing bacterial genomes to identify those that have “accessory” genes that can help plants defend themselves better against pathogens. On the other hand, these analyses also allow us to rule out bacterial strains that could have adverse effects. This information will be crucial for identifying microbes and microbial characteristics that are important for plant protection.

Tobacco whitefly uses a stolen gene to avoid the host's defenses. The discovery is highly relevant to pest control.

The first known case of a natural gene transfer from a plant to an insect has been identified by an international team of researchers. The insect is a whitefly and the discovery could pave the way for new pest control strategies, according to a report published in the newspaper Nature.

Scientists have discovered that Bemisia tabaci appropriated a gene from a host plant millions of years ago, reveals a article published in Cell. The gene allows this pest to neutralize a toxin produced by certain plants to defend themselves against insects.

Some whiteflies use plant genes to render toxins harmless. Image: Gaucho/ Wiki

This aleirodid, also known as the bean or sweet potato whitefly, although it attacks many other vegetable crops, is a worldwide pest and one of the most destructive we know of. A Bemisia tabaci ingests the sugary sap of hundreds of types of plants, excreting a sweet, sticky substance, honeydew, which then serves as a medium for fungi to grow. Whiteflies are also vectors for more than a hundred viruses that are pathogenic to plants.

“It's a remarkable example of how the study of evolution can underpin new approaches to applications such as crop protection,” says Andrew Gloss, who studies plant-pest interactions at the University of Chicago in the USA. The study suggests that inhibiting the gene identified could make this whitefly vulnerable to the toxin, opening up a new way of combating this pest.

Protecting plants from pathogens without genetically modifying crops? A team of Chinese researchers suggests an alternative strategy in the latest issue of Plant Communications.

The biotechnological methods that currently exist to create crops that are resistant to pests and diseases are limited in their applicability, mainly because they are based on transgenics or surface application (which does not allow access to the inner areas of the plant). A scientists' proposal involves the use of small RNA produced by beneficial microbes for crop protection, guaranteeing the stability and delivery of these RNAs to the appropriate place and time.

RNA associated with beneficial microbes in the microbiome to protect crops against pathogens.

The strategy, which eliminates “the need for genetic modification of cultures”, assumes that small RNAs (sRNAs) can be transferred from the microbiome to the host and pathogen, or between elements of the microbiome.

sRNAs are the crucial molecular devices of so-called gene silencing via RNA interference, a mechanism that regulates gene expression at both the transcriptional and post-transcriptional levels.

Title of original article: Trans-kingdom RNAs and their fates in recipient cells: advances, utilization, and perspectives

doi.org/10.1016/j.xplc.2021.100167